AWS HealthOmics

Managed genomics storage for read sets and references with automatic archive tiering.

Provider: aws
Kind: Object store
Category: Data
Official docs: https://docs.aws.amazon.com/omics/latest/dev/create-sequence-store.html

Properties · 5 set by this component

property	type	values	required	kind default	this component
archiveAfterDaysInactive · component property	integer	—	no	30	inherited
checksumOnWrite · advanced	boolean	—	no	false	▸ true
customerManagedKey · component property	boolean	—	no	false	inherited
durabilityNines · advanced	integer	—	no	—	inherited
encryptionAtRest	boolean	—	no	false	▸ true
managed	boolean	—	no	false	▸ true
objectLock	boolean	—	no	false	inherited
replication	enum	none \| primary-secondary \| quorum \| erasure-coded	no	none	inherited
s3AccessLogging · component property	boolean	—	no	false	inherited
storeType · component property	enum	sequence \| reference \| variant \| annotation	no	—	inherited
strongReadAfterWrite · advanced	boolean	—	no	false	inherited
tier	enum	hot \| warm \| cold	no	hot	▸ hot
versioning	boolean	—	no	false	▸ false
zones	integer	—	no	—	inherited

Rules that apply · 1

Every rule whose selector covers this component's kind or its category. Whether a rule fires depends on the design: its properties, its edges and its groups.

Object store in fewer than three zones with a durability targeterror

object-store-single-zone-with-durability-target

Eleven nines of durability assumes redundancy spread over at least three failure domains. An object store confined to fewer zones, or declaring none, cannot reach the target the design states.

— all of these hold:
— the design requirement `durability.annualNines` is a number greater than 10
— any of these hold:
— the node's `zones` has no value
— the node's `zones` is a number less than 3

Use it in a design

nodes:
  - { id: "healthomics", component: "aws-healthomics" }

Other Object store products · 32

Object Storage Servicealibaba-ossalibabacloudobject-store AWS HealthImagingaws-healthimagingawsobject-store Amazon S3 Express One Zoneaws-s3-express-one-zoneawsobject-store Amazon S3 Glacieraws-s3-glacierawsobject-store Amazon S3 Tablesaws-s3-tablesawsobject-store Amazon Security Lakeaws-security-lakeawsobject-store Amazon S3s3awsobject-store Azure Blob Storageazure-blob-storageazureobject-store Azure Data Lake Storageazure-data-lake-storageazureobject-store Microsoft Planetary Computer Proazure-planetary-computerazureobject-store Cache Reservecloudflare-cache-reservecloudflareobject-store Cloudflare Imagescloudflare-imagescloudflareobject-store Cloudflare R2cloudflare-r2cloudflareobject-store Backblaze B2 Cloud Storagebackblaze-b2object-store Blob storeblob-storeobject-store Ceph RADOS Gatewayceph-rgwobject-store Cloudinarycloudinaryobject-store Garagegarageobject-store lakeFSlakefsobject-store MinIOminioobject-store Generic object storeobject-storeobject-store Apache Ozoneozoneobject-store SeaweedFSseaweedfsobject-store Storjstorjobject-store OpenStack Swiftswiftobject-store Wasabi Hot Cloud Storagewasabiobject-store Spaces Object Storagedigitalocean-spacesdigitaloceanobject-store Google Cloud Storagegcsgcpobject-store IBM Cloud Object Storageibm-cloud-object-storageibmobject-store OCI Archive Storageoci-archive-storageociobject-store OCI Object Storageoci-object-storageociobject-store OUTSCALE Object Storage (OOS)outscale-oosoutscaleobject-store

Source

1# yaml-language-server: $schema=../../schema/component.schema.json
2# AWS HealthOmics storage: managed genomics stores (sequence, reference, variant, annotation) holding
3# FASTQ, uBAM, BAM and CRAM read sets. Per "HealthOmics storage" data is ACTIVE and immediately
4# retrievable, and data not accessed for 30 days moves to ARCHIVE; ingestion computes a HealthOmics
5# ETag for content integrity, and per "Creating a HealthOmics sequence store" encryption at rest is
6# owned and managed by AWS unless a customer managed CMK is chosen. S3 access logging is opt-in.
7schemaVersion: "1"
8type: "component"
9id: "aws-healthomics"
10kind: "object-store"
11provider: "aws"
12docs: "https://docs.aws.amazon.com/omics/latest/dev/create-sequence-store.html"
13defaults:
14  managed: true
15  tier: "hot"
16  encryptionAtRest: true
17  checksumOnWrite: true
18  versioning: false
19properties:
20  storeType:
21    type: "enum"
22    values: ["sequence", "reference", "variant", "annotation"]
23  archiveAfterDaysInactive:
24    type: "integer"
25    default: 30
26  customerManagedKey:
27    type: "boolean"
28    default: false
29  s3AccessLogging:
30    type: "boolean"
31    default: false

The same page as markdown, for an agent: /catalogue/components/aws-healthomics.md